Bacterial Whole Genome Sequencing Analysis Service
End-to-end interpretation of complete microbial genomes.
Whole genome analysis takes your sequencing data all the way from raw reads to a written interpretation. Instead of a folder of output files, you receive one report that explains what your strain is, what it carries and what that means for your research question.
It brings together the individual services on this page in one reproducible pipeline. The depth of analysis depends on the package you choose, from core characterisation in Basic to biosynthetic, carbohydrate and pathway analysis in Premium.
What you receive
- Read quality and assembly statistics, with a pass or fail verdict
- Species identification confirmed by ANI
- Annotated genome (GenBank and GFF files) with gene, rRNA and tRNA counts
- Package-dependent modules: AMR, virulence, plasmids, mobile elements, CAZymes, biosynthetic gene clusters, pathways
- Executive summary and scientific interpretation written for your study
- Methods section listing tools, versions and parameters
How we do it
- 1
Quality control
Reads are checked and trimmed with fastp. We flag low coverage or contamination before going further.
- 2
Assembly
De novo assembly with SPAdes, followed by assembly quality checks.
- 3
Annotation
Genes and features are annotated with Prokka and RAST.
- 4
Characterisation
Species identification, then each analysis module included in your package.
- 5
Interpretation and report
A bioinformatician reviews every result and writes up what it means.
When you need it
- Characterising a newly isolated strain for a thesis or paper
- Safety and functional assessment of a probiotic or starter culture
- Profiling an environmental or industrial isolate for useful traits
- Checking that a culture collection strain is what its label says
Questions
Do you do the sequencing as well?
No. We analyse data you already have. Most sequencing providers can deliver FASTQ files that you upload to us directly.
How long does it take?
A highlight report with the key findings is delivered within 72 hours. The full report follows within 5–7 days.
Other services
- Genome Assembly
- Genome Annotation
- Species Identification
- ANI Analysis
- AMR Analysis
- Virulence Analysis
- Plasmid Analysis
- Mobile Genetic Elements
- Secondary Metabolite Analysis
- CAZyme Annotation
- Functional Annotation
- Pathway Analysis
- Comparative Genomics
- Genome Visualization
- Publication-Ready Reports
- Scientific Consultation
For Research Use Only. BacSeq Analytics provides bioinformatics analysis and interpretation services for microbial genomic research. The reports are intended for research and investigational purposes only and are not intended for clinical diagnosis.
Ready to turn your genome data into insight?
Get a highlight report within 72 hours. Share your project and our bioinformatics team will respond within one business day.