Comparative Genomics and Pangenome Analysis Service
Pan-genome, core-genome and phylogenomic comparison.
Comparative genomics puts your strain in context. By comparing it with related genomes, we find the genes all strains share (the core genome), the genes only some have (the accessory genome) and the genes unique to yours.
Those unique genes often explain what makes a strain different, such as a new resistance gene, an extra metabolic pathway or a probiotic trait.
What you receive
- Pangenome summary: core, accessory and unique gene counts
- Gene presence/absence matrix
- Phylogenomic tree based on the core genome
- Strain-specific genes with their annotations
- Interpretation of the differences that matter for your study
How we do it
- 1
Genome set
We assemble your genomes and select public reference genomes.
- 2
Consistent annotation
All genomes are annotated the same way so genes can be compared fairly.
- 3
Gene clustering
Genes are grouped into families across all genomes to build the pangenome.
- 4
Phylogeny
A tree is built from the core genome alignment.
- 5
Interpretation
We highlight unique and differentially present genes.
When you need it
- Explaining why one strain behaves differently from another
- Placing a new isolate within its species
- Tracking related isolates in surveillance studies
Questions
How many genomes do I need?
You can compare your strain with public genomes even if you sequenced only one. More genomes give a more reliable picture of the core and accessory genome.
Other services
- Whole Genome Analysis
- Genome Assembly
- Genome Annotation
- Species Identification
- ANI Analysis
- AMR Analysis
- Virulence Analysis
- Plasmid Analysis
- Mobile Genetic Elements
- Secondary Metabolite Analysis
- CAZyme Annotation
- Functional Annotation
- Pathway Analysis
- Genome Visualization
- Publication-Ready Reports
- Scientific Consultation
For Research Use Only. BacSeq Analytics provides bioinformatics analysis and interpretation services for microbial genomic research. The reports are intended for research and investigational purposes only and are not intended for clinical diagnosis.
Ready to turn your genome data into insight?
Get a highlight report within 72 hours. Share your project and our bioinformatics team will respond within one business day.