A transparent, reproducible analysis pipeline
You upload sequencing data; we do the rest. Every step is orchestrated with Snakemake for full reproducibility — and none of it involves any wet-lab work.
No sequencing workflow. We do not perform dna extraction, library preparation, sequencing, wet lab services, clinical diagnostics. Our pipeline begins the moment your data is uploaded.
Client Uploads Data
Securely upload FASTQ, FASTA, assembled genomes or contigs.
Quality Control
Read quality assessment and trimming with fastp.
Genome Assembly / Validation
De novo assembly with SPAdes and assembly validation.
Genome Annotation
Structural and functional annotation with Prokka and RAST.
Functional Bioinformatics Analysis
AMR, virulence, plasmids, CAZymes and metabolite discovery.
Scientific Interpretation
Expert contextualisation of every genomic finding.
Professional PDF Report
Publication-quality report with dashboards and figures.
Secure Report Delivery
Encrypted delivery of your final report and data.
Fast by design
A focused, automated pipeline means speed without compromising rigour.
72h
Highlight report
Key findings, fast-tracked
5–7 days
Comprehensive report
Depending on scope
100%
Reproducible
Snakemake-orchestrated
Powered by best-in-class open bioinformatics tools
We build reproducible, Snakemake-orchestrated pipelines around the tools trusted by the microbial genomics community.
fastp
Read QC & trimming
SPAdes
Genome assembly
Prokka
Rapid annotation
RAST
Subsystem annotation
BlastKOALA
KEGG functional mapping
antiSMASH
Secondary metabolites
dbCAN2
CAZyme annotation
ResFinder
AMR detection
PathogenFinder2
Pathogenicity prediction
FastANI
ANI computation
Snakemake
Reproducible pipelines
fastp
Read QC & trimming
SPAdes
Genome assembly
Prokka
Rapid annotation
RAST
Subsystem annotation
BlastKOALA
KEGG functional mapping
antiSMASH
Secondary metabolites
dbCAN2
CAZyme annotation
ResFinder
AMR detection
PathogenFinder2
Pathogenicity prediction
FastANI
ANI computation
Snakemake
Reproducible pipelines
For Research Use Only. BacSeq Analytics provides bioinformatics analysis and interpretation services for microbial genomic research. The reports are intended for research and investigational purposes only and are not intended for clinical diagnosis.
Ready to turn your genome data into insight?
Get a highlight report within 72 hours. Share your project and our bioinformatics team will respond within one business day.